時間:2022-01-06 來源: 作者: 我要糾錯
由于微衛(wèi)星不穩(wěn)定(MSI)在泛癌種中具有明確且重要的臨床檢測意義,現(xiàn)已被國內(nèi)外眾多臨床指南共識強(qiáng)烈推薦常規(guī)檢測。臨床對于MSI的檢測需求越來越明確,是否檢測MSI現(xiàn)已不再是問題,如何選擇檢測位點(diǎn)給患者帶來最準(zhǔn)確的檢測結(jié)果才更加需要注意。
人類基因組中已知的微衛(wèi)星位點(diǎn)數(shù)目已有1900萬個[1],而如何在眾多位點(diǎn)中選擇最具有代表性的微衛(wèi)星位點(diǎn),國內(nèi)外指南共識其實早有定論。縱觀國內(nèi)外指南,明確推薦用于MSI檢測的Panel都是由五個位點(diǎn)組成,即美國癌癥研究中心(NCI)提出的由兩個單核苷酸位點(diǎn)和三個雙核苷酸位點(diǎn)組成的2B3D NCI Panel(BAT-26、BAT-25、D5S346、D2S123、D17S250)和由5個單核苷酸位點(diǎn)組成的Promega Panel。并且,5個位點(diǎn)的判定標(biāo)準(zhǔn)也是一致的:5個位點(diǎn)中,2個及以上的位點(diǎn)不穩(wěn)定為MSI-H;5個位點(diǎn)中1個位點(diǎn)不穩(wěn)定為MSI-L,5個位點(diǎn)均穩(wěn)定為MSS[2]。目前沒有任何指南推薦6個及6個以上的單核苷酸位點(diǎn)。
圖 1 NCCN指南明確推薦5個位點(diǎn)組成的兩套Panel以及判定標(biāo)準(zhǔn)
指南共識所推薦的兩套位點(diǎn)中,2B3D NCI Panel從被提出以來一直被指南共識所推薦,其推薦地位從未被動搖。而5個單核苷酸位點(diǎn)Panel還是經(jīng)過了較為復(fù)雜的演進(jìn)過程,最初是法國人類多態(tài)性研究中心基于高加索人群數(shù)據(jù)提出的Pentaplex Panel(BAT25、BAT26、NR-21、NR-22、NR-24)[3],該P(yáng)anel被Revised Bethesda指南推薦[4]。后來,美國Promega公司在Pentaplex Panel上做了進(jìn)一步改進(jìn),將NR-22替換為Mono-27推出了Promega Panel(BAT-25、BAT-26、NR-21、NR-24、MONO-27);诖,NCCN指南推薦2B3D NCI Panel和以Promega Panel為主的5個單核苷酸位點(diǎn)Panel用于MSI檢測,而沒有任何指南推薦6個單核苷酸位點(diǎn)。
表 1 不同檢測Panel指南推薦與臨床研究應(yīng)用情況
同時,國內(nèi)外各種PD-1/L1免疫檢查點(diǎn)抑制劑的大型臨床研究入組MSI-H患者的篩選位點(diǎn)都遵循了指南推薦,選擇的2B3D NCI Panel或Promega Panel由5個位點(diǎn)組成的檢測Panel,比如帕博利珠單抗的臨床研究中以上兩種Panel都使用過;納武利尤單抗、阿維魯單抗、德瓦魯單抗的臨床研究則更多使用的是2B3D NCI Panel。而目前公開的數(shù)據(jù)和研究中,沒有任何臨床研究是用的是5個位點(diǎn)以上的MSI檢測Panel。因此,6個位點(diǎn)的檢測Panel并沒有免疫治療伴隨診斷的數(shù)據(jù)支持。
圖 2 大型臨床研究采用5個位點(diǎn)的2B3D NCI Panel或單核苷酸位點(diǎn)
近日,市面上有些聲音將某個由6個單核苷酸位點(diǎn)組成的Panel與指南共識推薦和臨床研究中使用的Pentaplex Panel或Promega Panel混同,企圖混淆視聽?梢栽敿(xì)比較一下Pentaplex Panel、Promega Panel 和6個單核苷酸的Panel。
表 2 單核苷酸Panel位點(diǎn)信息
可以看出,6個單核苷酸位點(diǎn)與Pentaplex相比,少了NR-22位點(diǎn),且多了NR-27和MONO-27位點(diǎn),同時也比Promega Panel多一個NR-27位點(diǎn)。而基于國內(nèi)人群不同檢測Panel的MSI-H檢出率的META分析結(jié)果顯示,6個單核苷酸位點(diǎn)Panel的MSI-H整體檢出率遠(yuǎn)低于5個單核苷酸的Promega Panel,所有組合中,檢出率最高的還是2B3D NCI Panel[9]。
表 3 中國人群不同MSI檢測Panel檢出率匯總
那么同樣是單核苷酸Panel,為什么6個單核苷酸比Promega的檢出率低呢?我們發(fā)現(xiàn),6個單核苷酸位點(diǎn)相比Promega位點(diǎn)多出了NR-27位點(diǎn),這個位點(diǎn)是從哪里來的呢?我們在這一篇發(fā)表于Disease Markers(影響因子=3.434)雜志的文獻(xiàn)中,發(fā)現(xiàn)了NR-27的選擇原因。
圖 3 由于NR22位點(diǎn)無法兼容,NR27位點(diǎn)引入Pentaplex Panel
在20年前,我們進(jìn)行MSI檢測時,大多是進(jìn)行的單重PCR,操作是較為復(fù)雜的,于是研究者們希望能夠開發(fā)多重PCR在一個單管中完成多個微衛(wèi)星位點(diǎn)的檢測進(jìn)而簡化流程。但是,在將Pentaplex Panel與多重PCR技術(shù)結(jié)合時,研究團(tuán)隊發(fā)現(xiàn)NR-22位點(diǎn)無法與其余四個位點(diǎn)在同一個單管中兼容,因此將NR-27位點(diǎn)引入,替代了Pentaplex的NR-22位點(diǎn)[24]。但是原文中,并沒有闡述為什么會選擇NR-27,也并沒有對NR-27在人群中的敏感性。
這個NR-27位點(diǎn)在中國人群中并沒有公開的研究數(shù)據(jù)或文獻(xiàn)報道來證實其檢測性能。而基于國外人群數(shù)據(jù)顯示,NR-27位點(diǎn)的檢測敏感性僅6%左右[25],6個位點(diǎn)組合加入NR-27位點(diǎn)很有可能會降低檢測Panel的整體敏感性。并且6個單核苷酸位點(diǎn)的判讀標(biāo)準(zhǔn)是不明確的,因為指南中根本沒有推薦過任何大于5個位點(diǎn)的檢測Panel。這些因素有可能就是6個單核苷酸位點(diǎn)MSI-H檢出率相較5個位點(diǎn)的組合更低,更容易造成漏檢的原因。
圖 4 數(shù)據(jù)提示NR-27位點(diǎn)靈敏度不高
綜上,無論是經(jīng)典2B3D還是單核苷酸位點(diǎn)組合,指南推薦和有數(shù)據(jù)驗證的主流位點(diǎn)都是5個位點(diǎn)組成的Panel,6個位點(diǎn)的檢測panel沒有任何指南推薦,且無任何伴隨診斷的用藥的數(shù)據(jù)基礎(chǔ)。
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